Transcript: lnc-LNPK-1:1

Basic information

LNCipedia transcript ID: lnc-LNPK-1:1 
LNCipedia gene ID: lnc-LNPK-1
Ensembl Gene ID: ENSG00000229779
Ensembl Transcript ID: ENST00000458254
Location (hg38): chr2:175904371-175905502
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 306 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003442; ENST00000458254; ENST00000458254.1; AC016751.2-001; OTTHUMT00000333948.1; NONHSAT075616
Alternative gene names: XLOC_002402; linc-ATP5G3-2; ENSG00000229779; AC016751.2; ENSG00000229779.1; OTTHUMG00000154111.1; AC016751.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -148.7916 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LNPK-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1715-1:1
3.1 lnc-KIAA1715-1:1
4.0 lnc-KIAA1715-1:1
4.1 lnc-KIAA1715-1:1
5.0 lnc-KIAA1715-1:1
5.1 lnc-CHN1-23:1
5.2 lnc-LNPK-1:1