Transcript: lnc-LONP2-4:2

Basic information

LNCipedia transcript ID: lnc-LONP2-4:2 
LNCipedia gene ID: lnc-LONP2-4
Ensembl Gene ID: ENSG00000259912
Ensembl Transcript ID: ENST00000565055
Location (hg38): chr16:48620319-48622033
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 306 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565055.1; CTC-527H23.2-001; OTTHUMT00000426650.1
Alternative gene names: ENSG00000259912.1; CTC-527H23.2; OTTHUMG00000174454.1; AC023813.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.5732 non-coding 
CPAT coding probability 3.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LONP2-4:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LONP2-4:2
4.0 lnc-LONP2-4:2
4.1 lnc-LONP2-4:2
5.0 lnc-LONP2-4:2
5.1 lnc-ADGRG1-168:2
5.2 lnc-LONP2-4:2