Transcript: lnc-LOX-6:1

Basic information

LNCipedia transcript ID: lnc-LOX-6:1 
LNCipedia gene ID: lnc-LOX-6
Ensembl Gene ID: ENSG00000272139
Ensembl Transcript ID: ENST00000607804
Location (hg38): chr5:122311297-122311673
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 377 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607804.1
Alternative gene names: ENSG00000272139.1; CTD-2544H17.2; AC113349.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.3429 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LOX-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LOX-6:1
4.0 lnc-LOX-6:1
4.1 lnc-LOX-6:1
5.0 lnc-LOX-6:1
5.1 lnc-LOX-6:1
5.2 lnc-LOX-6:1