Transcript: lnc-LPA-2:1

Basic information

LNCipedia transcript ID: lnc-LPA-2:1 
LNCipedia gene ID: lnc-LPA-2
Location (hg38): chr6:160815550-160817351
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1190 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011606; ENST00000454317; ENST00000454317.1; RP1-54A3.1-001; OTTHUMT00000042967.1; NONHSAT115915
Alternative gene names: XLOC_005906; linc-LPA-1; ENSG00000223627; RP1-54A3.1; ENSG00000223627.1; OTTHUMG00000015958.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.4981 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LPA-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LPA-2:1
3.1 lnc-LPA-2:1
4.0 lnc-LPA-2:1
4.1 lnc-LPA-2:1
5.0 lnc-LPA-2:1
5.1 lnc-AGPAT4-4:1
5.2 lnc-LPA-2:1