Transcript: lnc-LPA-3:3

Basic information

LNCipedia transcript ID: lnc-LPA-3:3 
LNCipedia gene ID: lnc-LPA-3
Ensembl Gene ID: ENSG00000224371
Ensembl Transcript ID: ENST00000443380
Location (hg38): chr6:160873016-160918449
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 413 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443380; ENST00000443380.1; RP11-235G24.1-002; OTTHUMT00000042969.1; NONHSAT115920; ENST00000443380.5
Alternative gene names: ENSG00000224371; RP11-235G24.1; ENSG00000224371.1; OTTHUMG00000015959.1; ENSG00000224371.5; AL391361.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.2516 non-coding 
CPAT coding probability 7.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LPA-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LPA-3:3
3.1 lnc-LPA-3:3
4.0 lnc-LPA-3:3
4.1 lnc-LPA-3:3
5.0 lnc-LPA-3:3
5.1 lnc-AGPAT4-3:3
5.2 lnc-LPA-3:3