Transcript: lnc-LPCAT1-4:3

Basic information

LNCipedia transcript ID: lnc-LPCAT1-4:3 
LNCipedia gene ID: lnc-LPCAT1-4
Location (hg38): chr5:1628532-1634016
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1571 bp
Exons: 3
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1111:4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 24.5725 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LPCAT1-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LPCAT1-3:31
4.1 lnc-LPCAT1-3:31
5.0 lnc-LPCAT1-3:31
5.1 lnc-IRX2-13:3
5.2 lnc-LPCAT1-4:3