Transcript: lnc-LPIN2-1:2

Basic information

LNCipedia transcript ID: lnc-LPIN2-1:2 
LNCipedia gene ID: lnc-LPIN2-1
Ensembl Gene ID: ENSG00000266049
Ensembl Transcript ID: ENST00000583546
Location (hg38): chr18:2688564-2832923
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 690 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583546.1; RP11-703M24.5-001; OTTHUMT00000441237.2; NONHSAT056937
Alternative gene names: ENSG00000266049.1; RP11-703M24.5; OTTHUMG00000178268.2; AP001011.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.9369 non-coding 
CPAT coding probability 3.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LPIN2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LPIN2-1:2
4.0 lnc-LPIN2-1:2
4.1 lnc-LPIN2-1:2
5.0 lnc-LPIN2-1:2
5.1 lnc-SMAD2-364:2
5.2 lnc-LPIN2-1:2