Transcript: lnc-LRFN2-1:1

Basic information

LNCipedia transcript ID: lnc-LRFN2-1:1 
LNCipedia gene ID: lnc-LRFN2-1
Ensembl Gene ID: ENSG00000226070
Ensembl Transcript ID: ENST00000447315
Location (hg38): chr6:40358744-40369474
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 824 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011487; ENST00000447315; ENST00000447315.1; RP11-552E20.4-001; OTTHUMT00000040482.1; NONHSAT112469
Alternative gene names: XLOC_005713; linc-MOCS1-2; ENSG00000226070; RP11-552E20.4; ENSG00000226070.1; OTTHUMG00000014659.1; AL139275.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.5235 non-coding 
CPAT coding probability 9.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRFN2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRFN2-1:1
3.1 lnc-LRFN2-1:1
4.0 lnc-LRFN2-1:1
4.1 lnc-LRFN2-1:1
5.0 lnc-LRFN2-1:1
5.1 lnc-TREML2-34:1
5.2 lnc-LRFN2-1:1