Transcript: lnc-LRFN3-59:3

Basic information

LNCipedia transcript ID: lnc-LRFN3-59:3 
LNCipedia gene ID: lnc-LRFN3-59
Ensembl Gene ID: ENSG00000267388
Ensembl Transcript ID: ENST00000587412
Location (hg38): chr19:35960512-35964063
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 600 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT065944; ENST00000587412.1
Alternative gene names: ENSG00000267388.1; AF038458.5; AF038458.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -338.3148 non-coding 
CPAT coding probability 12.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRFN3-59:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRFN3-4:1
4.0 lnc-LRFN3-4:1
4.1 lnc-LRFN3-4:1
5.0 lnc-LRFN3-4:1
5.1 lnc-GPR42-59:3
5.2 lnc-LRFN3-59:3