Transcript: lnc-LRP8-3:1

Basic information

LNCipedia transcript ID: lnc-LRP8-3:1 
LNCipedia gene ID: lnc-LRP8-3
Ensembl Gene ID: ENSG00000230138
Ensembl Transcript ID: ENST00000449958
Location (hg38): chr1:53366668-53368245
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 850 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000523; ENST00000449958; ENST00000449958.1; RP11-117D22.2-001; OTTHUMT00000022107.1; NONHSAT003320
Alternative gene names: XLOC_000837; linc-LRP8-1; ENSG00000230138; RP11-117D22.2; ENSG00000230138.1; OTTHUMG00000008077.1; AC119428.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.461 non-coding 
CPAT coding probability 3.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRP8-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRP8-3:1
3.1 lnc-LRP8-3:1
4.0 lnc-LRP8-3:1
4.1 lnc-LRP8-3:1
5.0 lnc-LRP8-3:1
5.1 lnc-LRP8-8:1
5.2 lnc-LRP8-3:1