Transcript: lnc-LRPAP1-3:1

Basic information

LNCipedia transcript ID: lnc-LRPAP1-3:1 
LNCipedia gene ID: lnc-LRPAP1-3
Ensembl Gene ID: ENSG00000250986
Ensembl Transcript ID: ENST00000511928
Location (hg38): chr4:3758748-3763390
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4525 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007710; ENST00000511928; ENST00000511928.1; AC141928.1-002; OTTHUMT00000357609.4; NONHSAT094895
Alternative gene names: XLOC_003862; linc-LRPAP1-2; ENSG00000250986; AC141928.1; ENSG00000250986.1; OTTHUMG00000159831.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.0128 non-coding 
CPAT coding probability 49.44% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRPAP1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRPAP1-2:1
3.1 lnc-LRPAP1-3:1
4.0 lnc-LRPAP1-3:1
4.1 lnc-LRPAP1-3:1
5.0 lnc-LRPAP1-3:1
5.1 lnc-PSAPL1-39:1
5.2 lnc-LRPAP1-3:1