Transcript: lnc-LRRC18-1:1

Basic information

LNCipedia transcript ID: lnc-LRRC18-1:1 
LNCipedia gene ID: lnc-LRRC18-1
Ensembl Gene ID: ENSG00000241577
Ensembl Transcript ID: ENST00000430438
Location (hg38): chr10:48883955-48935213
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 559 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430438.1; RP11-523O18.7-001; OTTHUMT00000047965.1; NONHSAT013282
Alternative gene names: ENSG00000241577.1; RP11-523O18.7; OTTHUMG00000018183.1; AC060234.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -640.5223 non-coding 
CPAT coding probability 21.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC18-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC18-1:1
4.0 lnc-LRRC18-1:1
4.1 lnc-LRRC18-1:1
5.0 lnc-LRRC18-1:1
5.1 lnc-LRRC18-1:1
5.2 lnc-LRRC18-1:1