Transcript: lnc-LRRC32-2:5

Basic information

LNCipedia transcript ID: lnc-LRRC32-2:5 
LNCipedia gene ID: lnc-LRRC32-2
Ensembl Gene ID: ENSG00000255479
Ensembl Transcript ID: ENST00000528781
Location (hg38): chr11:76625462-76626834
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 831 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528781; ENST00000528781.1; RP11-672A2.6-001; OTTHUMT00000383012.1; NONHSAT023175
Alternative gene names: ENSG00000255479; RP11-672A2.6; ENSG00000255479.1; OTTHUMG00000165258.1; AP001189.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.0165 non-coding 
CPAT coding probability 1.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC32-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC32-3:1
3.1 lnc-LRRC32-3:1
4.0 lnc-LRRC32-3:1
4.1 lnc-LRRC32-2:5
5.0 lnc-LRRC32-2:5
5.1 lnc-WNT11-9:5
5.2 lnc-LRRC32-2:5