Transcript: lnc-LRRC36-1:1

Basic information

LNCipedia transcript ID: lnc-LRRC36-1:1 
LNCipedia gene ID: lnc-LRRC36-1
Location (hg38): chr16:67432692-67435028
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2337 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000571772.1; RP11-297D21.3-001; OTTHUMT00000437140.1; NONHSAT143124
Alternative gene names: ENSG00000262839.1; RP11-297D21.3; OTTHUMG00000177485.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.0775 non-coding 
CPAT coding probability 1.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC36-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC36-1:1
4.0 lnc-LRRC36-1:1
4.1 lnc-LRRC36-1:1
5.0 lnc-LRRC36-1:1
5.1 lnc-NOL3-23:2
5.2 lnc-LRRC36-1:1