Transcript: lnc-LRRC38-1:1

Basic information

LNCipedia transcript ID: lnc-LRRC38-1:1 
LNCipedia gene ID: lnc-LRRC38-1
Location (hg38): chr1:13657311-13660538
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1007 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000470; ENST00000441809; ENST00000441809.1; CTA-520D8.2-001; OTTHUMT00000021790.1; NONHSAT000981
Alternative gene names: XLOC_000707; linc-LRRC38-9; ENSG00000237445; CTA-520D8.2; ENSG00000237445.1; OTTHUMG00000007915.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.0402 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC38-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC38-1:1
3.1 lnc-LRRC38-1:1
4.0 lnc-LRRC38-1:1
4.1 lnc-LRRC38-1:1
5.0 lnc-LRRC38-1:1
5.1 lnc-LRRC38-1:1
5.2 lnc-LRRC38-1:1