Transcript: lnc-LRRC38-2:1

Basic information

LNCipedia transcript ID: lnc-LRRC38-2:1 
LNCipedia gene ID: lnc-LRRC38-2
Location (hg38): chr1:13778265-13779130
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 408 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000420227.1; RP5-1177E19.2-001; OTTHUMT00000021948.1; NONHSAT000988
Alternative gene names: ENSG00000227612.1; RP5-1177E19.2; OTTHUMG00000007996.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -114.1523 non-coding 
CPAT coding probability 6.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC38-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC38-2:1
4.0 lnc-LRRC38-2:1
4.1 lnc-LRRC38-2:1
5.0 lnc-LRRC38-2:1
5.1 lnc-LRRC38-2:1
5.2 lnc-LRRC38-2:1