Transcript: lnc-LRRC3C-1:2

Basic information

LNCipedia transcript ID: lnc-LRRC3C-1:2 
LNCipedia gene ID: lnc-LRRC3C-1
Ensembl Gene ID: ENSG00000264968
Ensembl Transcript ID: ENST00000578478
Location (hg38): chr17:39927844-39929355
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 306 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578478.1; RP11-387H17.4-002; OTTHUMT00000446844.1; NONHSAT053498
Alternative gene names: ENSG00000264968.1; RP11-387H17.4; OTTHUMG00000179520.1; AC090844.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.8354 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC3C-1:2 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC3C-1:2
4.0 lnc-LRRC3C-1:2
4.1 lnc-LRRC3C-1:2
5.0 lnc-LRRC3C-1:2
5.1 lnc-THRA-5:2
5.2 lnc-LRRC3C-1:2