Transcript: lnc-LRRC47-78:1

Basic information

LNCipedia transcript ID: lnc-LRRC47-78:1 
LNCipedia gene ID: lnc-LRRC47-78
Location (hg38): chr1:3734286-3747375
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6239 bp
Exons: 6
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227372.6|MICT00000001683.1
Alternative gene names: PDAM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 171.3941 coding 
CPAT coding probability 12.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRRC47-78:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TP73-AS1:26
5.0 TP73-AS1:26
5.1 lnc-CLSTN1-78:1
5.2 lnc-LRRC47-78:1