Transcript: lnc-LRRC47-78:19

Basic information

LNCipedia transcript ID: lnc-LRRC47-78:19 
LNCipedia gene ID: lnc-LRRC47-78
Location (hg38): chr1:3735984-3747322
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6358 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000452079; ENST00000452079.1; TP73-AS1-003; OTTHUMT00000009558.1; ENST00000452079.5
Alternative gene names: ENSG00000227372; TP73-AS1; ENSG00000227372.4; OTTHUMG00000003414.1; ENSG00000227372.6; ENSG00000227372.10; PDAM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 171.3941 coding 
CPAT coding probability 83.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRRC47-78:19 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC47-1:2
3.1 lnc-LRRC47-1:2
4.0 TP73-AS1:11
4.1 TP73-AS1:11
5.0 TP73-AS1:11
5.1 lnc-CLSTN1-78:19
5.2 lnc-LRRC47-78:19