Transcript: lnc-LRRC47-78:20

Basic information

LNCipedia transcript ID: lnc-LRRC47-78:20 
LNCipedia gene ID: lnc-LRRC47-78
Location (hg38): chr1:3736926-3747256
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5475 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT000539
Alternative gene names: PDAM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 155.4052 coding 
CPAT coding probability 97.31% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRRC47-78:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC47-1:15
4.0 TP73-AS1:12
4.1 TP73-AS1:12
5.0 TP73-AS1:12
5.1 lnc-CLSTN1-78:20
5.2 lnc-LRRC47-78:20