Transcript: lnc-LRRC47-78:21

Basic information

LNCipedia transcript ID: lnc-LRRC47-78:21 
LNCipedia gene ID: lnc-LRRC47-78
Location (hg38): chr1:3735984-3746776
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3329 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000418088; ENST00000418088.1; TP73-AS1-002; OTTHUMT00000009557.1; ENST00000418088.5
Alternative gene names: ENSG00000227372; TP73-AS1; ENSG00000227372.4; OTTHUMG00000003414.1; ENSG00000227372.6; ENSG00000227372.10; PDAM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 155.4052 coding 
CPAT coding probability 50.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRRC47-78:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC47-1:3
3.1 lnc-LRRC47-1:3
4.0 TP73-AS1:13
4.1 TP73-AS1:13
5.0 TP73-AS1:13
5.1 lnc-CLSTN1-78:21
5.2 lnc-LRRC47-78:21