Transcript: lnc-LRRC47-78:30

Basic information

LNCipedia transcript ID: lnc-LRRC47-78:30 
LNCipedia gene ID: lnc-LRRC47-78
Location (hg38): chr1:3738075-3742858
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 737 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: NONHSAT000541; ENST00000587071.1; ENST00000587071.5
Alternative gene names: ENSG00000227372.6; TP73-AS1; ENSG00000227372.10; PDAM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.7123 non-coding 
CPAT coding probability 42.49% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LRRC47-78:30 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC47-1:20
4.0 TP73-AS1:20
4.1 TP73-AS1:20
5.0 TP73-AS1:20
5.1 lnc-CLSTN1-78:30
5.2 lnc-LRRC47-78:30