Transcript: lnc-LRRC47-78:33

Basic information

LNCipedia transcript ID: lnc-LRRC47-78:33 
LNCipedia gene ID: lnc-LRRC47-78
Location (hg38): chr1:3738516-3740188
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1493 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT000542
Alternative gene names: PDAM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.9654 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC47-78:33 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC47-1:23
4.0 TP73-AS1:23
4.1 TP73-AS1:23
5.0 TP73-AS1:23
5.1 lnc-CLSTN1-78:33
5.2 lnc-LRRC47-78:33