Transcript: lnc-LRRC47-78:34

Basic information

LNCipedia transcript ID: lnc-LRRC47-78:34 
LNCipedia gene ID: lnc-LRRC47-78
Location (hg38): chr1:3736175-3737875
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 657 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000419973; ENST00000419973.1; RP5-1092A11.3-001; OTTHUMT00000009555.1; NONHSAT000534
Alternative gene names: ENSG00000244553; RP5-1092A11.3; ENSG00000244553.1; OTTHUMG00000003413.1; ENSG00000227372.6; TP73-AS1; ENSG00000227372.10; PDAM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.1951 non-coding 
CPAT coding probability 10.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC47-78:34 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC47-1:5
3.1 lnc-LRRC47-1:5
4.0 TP73-AS1:24
4.1 TP73-AS1:24
5.0 TP73-AS1:24
5.1 lnc-CLSTN1-78:34
5.2 lnc-LRRC47-78:34