Transcript: lnc-LRRC47-78:35

Basic information

LNCipedia transcript ID: lnc-LRRC47-78:35 
LNCipedia gene ID: lnc-LRRC47-78
Location (hg38): chr1:3735601-3736588
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 988 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000624167.1
Alternative gene names: ENSG00000227372.10; TP73-AS1; PDAM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -46.4631 non-coding 
CPAT coding probability 10.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC47-78:35 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 TP73-AS1:25
4.1 TP73-AS1:25
5.0 TP73-AS1:25
5.1 lnc-CLSTN1-78:35
5.2 lnc-LRRC47-78:35