Transcript: lnc-LRRC49-1:1

Basic information

LNCipedia transcript ID: lnc-LRRC49-1:1 
LNCipedia gene ID: lnc-LRRC49-1
Ensembl Gene ID: ENSG00000259532
Ensembl Transcript ID: ENST00000558429
Location (hg38): chr15:70748932-70754177
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 472 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558429.1; RP11-138H8.2-001; OTTHUMT00000417194.1; NONHSAT047012
Alternative gene names: ENSG00000259532.1; RP11-138H8.2; OTTHUMG00000172175.1; AC009269.3; AC009269.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.9696 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC49-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC49-1:1
4.0 lnc-LRRC49-1:1
4.1 lnc-LRRC49-1:1
5.0 lnc-LRRC49-1:1
5.1 lnc-NOX5-24:1
5.2 lnc-LRRC49-1:1