Transcript: lnc-LRRC4C-2:2

Basic information

LNCipedia transcript ID: lnc-LRRC4C-2:2 
LNCipedia gene ID: lnc-LRRC4C-2
Ensembl Gene ID: ENSG00000255300
Ensembl Transcript ID: ENST00000527828
Location (hg38): chr11:41993385-42085458
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 584 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000527828; ENST00000527828.1; RP11-148I19.1-001; OTTHUMT00000389990.1; NONHSAT018907; ENST00000527828.5
Alternative gene names: ENSG00000255300; RP11-148I19.1; ENSG00000255300.1; OTTHUMG00000166487.1; ENSG00000255300.5; AC079917.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.0583 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC4C-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRRC4C-2:2
3.1 lnc-LRRC4C-2:2
4.0 lnc-LRRC4C-2:2
4.1 lnc-LRRC4C-2:2
5.0 lnc-LRRC4C-2:2
5.1 lnc-RAG2-13:2
5.2 lnc-LRRC4C-2:2