Transcript: lnc-LRRC53-1:1

Basic information

LNCipedia transcript ID: lnc-LRRC53-1:1 
LNCipedia gene ID: lnc-LRRC53-1
Ensembl Gene ID: ENSG00000237324
Ensembl Transcript ID: ENST00000415549
Location (hg38): chr1:74341579-74378802
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 791 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415549.2; RP11-439H8.4-001; OTTHUMT00000092523.2; NONHSAT003959
Alternative gene names: ENSG00000237324.2; RP11-439H8.4; OTTHUMG00000037897.2; ENSG00000237324.3; AC093158.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.0449 non-coding 
CPAT coding probability 1.21% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC53-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC53-1:1
4.0 lnc-LRRC53-1:1
4.1 lnc-LRRC53-1:1
5.0 lnc-LRRC53-1:1
5.1 lnc-FUBP1-41:1
5.2 lnc-LRRC53-1:1