Transcript: lnc-LRRC72-3:1

Basic information

LNCipedia transcript ID: lnc-LRRC72-3:1 
LNCipedia gene ID: lnc-LRRC72-3
Ensembl Gene ID: ENSG00000237070
Ensembl Transcript ID: ENST00000451240
RefSeq ID: NR_134258
Location (hg38): chr7:15667947-15681980
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3743 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000451240; ENST00000451240.1; AC005550.3-001; OTTHUMT00000326059.1; NONHSAT119280; NR_134258.1
Alternative gene names: ENSG00000237070; AC005550.3; ENSG00000237070.1; OTTHUMG00000152391.1; LOC105375166; AC005550.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.0867 non-coding 
CPAT coding probability 7.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC72-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC006035.2-3:1
3.1 lnc-AC006035.2-3:1
4.0 lnc-AC006035.2-3:1
4.1 lnc-AC006035.2-3:1
5.0 lnc-AC006035.2-3:1
5.1 lnc-AHR-12:1
5.2 lnc-LRRC72-3:1