Transcript: lnc-LRRC72-4:1

Basic information

LNCipedia transcript ID: lnc-LRRC72-4:1 
LNCipedia gene ID: lnc-LRRC72-4
Ensembl Gene ID: ENSG00000227489
Ensembl Transcript ID: ENST00000445093
Location (hg38): chr7:15066207-15068651
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 653 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012957; ENST00000445093; ENST00000445093.1; AC006458.3-001; OTTHUMT00000326054.1; NONHSAT119274
Alternative gene names: XLOC_005990; linc-LOC100129335-3; ENSG00000227489; AC006458.3; ENSG00000227489.1; OTTHUMG00000152389.1; AC006458.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.9504 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC72-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC006035.2-4:1
3.1 lnc-AC006035.2-4:1
4.0 lnc-AC006035.2-4:1
4.1 lnc-AC006035.2-4:1
5.0 lnc-AC006035.2-4:1
5.1 lnc-AHR-24:1
5.2 lnc-LRRC72-4:1