Transcript: lnc-LRRC8D-4:1

Basic information

LNCipedia transcript ID: lnc-LRRC8D-4:1 
LNCipedia gene ID: lnc-LRRC8D-4
Ensembl Gene ID: ENSG00000272672
Ensembl Transcript ID: ENST00000608671
Location (hg38): chr1:89939601-89940147
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 547 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608671.1
Alternative gene names: ENSG00000272672.1; RP11-302M6.5; AL391497.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -239.7256 non-coding 
CPAT coding probability 3.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRC8D-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LRRC8D-4:1
4.0 lnc-LRRC8D-4:1
4.1 lnc-LRRC8D-4:1
5.0 lnc-LRRC8D-4:1
5.1 lnc-ZNF326-4:2
5.2 lnc-LRRC8D-4:1