Transcript: lnc-LRRK2-1:5

Basic information

LNCipedia transcript ID: lnc-LRRK2-1:5 
LNCipedia gene ID: lnc-LRRK2-1
Location (hg38): chr12:40520633-40524566
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 521 bp
Exons: 8
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021098; NONHSAT027732
Alternative gene names: XLOC_009713; linc-CNTN1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LRRK2-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNTN1-1:1
3.1 lnc-CNTN1-1:1
4.0 lnc-MUC19-1:9
4.1 lnc-MUC19-1:9
5.0 lnc-MUC19-1:9
5.1 lnc-IRAK4-21:5
5.2 lnc-LRRK2-1:5