Transcript: lnc-LSM11-6:1

Basic information

LNCipedia transcript ID: lnc-LSM11-6:1 
LNCipedia gene ID: lnc-LSM11-6
Ensembl Gene ID: ENSG00000254350
Ensembl Transcript ID: ENST00000517595
Location (hg38): chr5:158424585-158452758
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 706 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517595; ENST00000517595.1; RP11-542A14.1-001; OTTHUMT00000373933.1; NONHSAT104796
Alternative gene names: ENSG00000254350; RP11-542A14.1; ENSG00000254350.1; OTTHUMG00000163518.1; AC091979.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.2442 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LSM11-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LSM11-6:1
3.1 lnc-LSM11-6:1
4.0 lnc-LSM11-6:1
4.1 lnc-LSM11-6:1
5.0 lnc-LSM11-6:1
5.1 lnc-MRPL22-29:2
5.2 lnc-LSM11-6:1