Transcript: lnc-LTBP3-3:2

Basic information

LNCipedia transcript ID: lnc-LTBP3-3:2 
LNCipedia gene ID: lnc-LTBP3-3
Ensembl Gene ID: ENSG00000279243
Ensembl Transcript ID: ENST00000622944
Location (hg38): chr11:65487241-65488136
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 536 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622944.1
Alternative gene names: ENSG00000279243.1; CMB9-22P13.2; AP000769.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -187.7897 non-coding 
CPAT coding probability 1.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LTBP3-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LTBP3-3:2
4.1 lnc-LTBP3-3:2
5.0 lnc-LTBP3-3:2
5.1 lnc-LTBP3-12:2
5.2 lnc-LTBP3-3:2