Transcript: lnc-LTBR-1:5

Basic information

LNCipedia transcript ID: lnc-LTBR-1:5 
LNCipedia gene ID: lnc-LTBR-1
Ensembl Gene ID: ENSG00000256433
Ensembl Transcript ID: ENST00000541888
Location (hg38): chr12:6393905-6396148
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1803 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541888.2
Alternative gene names: ENSG00000256433.2; RP1-102E24.8; AC005840.3; AC005840.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.9297 non-coding 
CPAT coding probability 10.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LTBR-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LTBR-1:5
4.1 lnc-LTBR-1:5
5.0 lnc-LTBR-1:5
5.1 lnc-CLEC4D-71:4
5.2 lnc-LTBR-1:5