Transcript: lnc-LXN-1:1

Basic information

LNCipedia transcript ID: lnc-LXN-1:1 
LNCipedia gene ID: lnc-LXN-1
Ensembl Gene ID: ENSG00000243150
Ensembl Transcript ID: ENST00000475981
RefSeq ID: NR_104147
Location (hg38): chr3:158545220-158571066
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1640 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000475981; ENST00000475981.1; RP11-538P18.2-001; OTTHUMT00000352221.1; NONHSAT092928; NR_104147; ENST00000475981.5; NR_104147.1
Alternative gene names: ENSG00000243150; RP11-538P18.2; ENSG00000243150.1; OTTHUMG00000158791.1; ENSG00000243150.5; AC106707.1; LOC100996447


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.1685 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LXN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LXN-1:1
3.1 lnc-LXN-1:1
4.0 lnc-LXN-1:1
4.1 lnc-LXN-1:1
5.0 lnc-LXN-1:1
5.1 lnc-SHOX2-9:2
5.2 lnc-LXN-1:1