Transcript: lnc-LXN-1:2

Basic information

LNCipedia transcript ID: lnc-LXN-1:2 
LNCipedia gene ID: lnc-LXN-1
Ensembl Gene ID: ENSG00000243150
Ensembl Transcript ID: ENST00000479233
Location (hg38): chr3:158553858-158570907
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 472 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000479233; ENST00000479233.1; RP11-538P18.2-002; OTTHUMT00000352222.1; NONHSAT092929
Alternative gene names: ENSG00000243150; RP11-538P18.2; ENSG00000243150.1; OTTHUMG00000158791.1; ENSG00000243150.5; AC106707.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
RMHCLPLR 92.3076923076923% antisense-3
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.1971 non-coding 
CPAT coding probability 2.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LXN-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LXN-1:2
3.1 lnc-LXN-1:2
4.0 lnc-LXN-1:2
4.1 lnc-LXN-1:2
5.0 lnc-LXN-1:2
5.1 lnc-SHOX2-9:8
5.2 lnc-LXN-1:2