Transcript: lnc-LXN-1:7

Basic information

LNCipedia transcript ID: lnc-LXN-1:7 
LNCipedia gene ID: lnc-LXN-1
Location (hg38): chr3:158544907-158571066
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1671 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000243150.1|MICT00000253313.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
RMHCLPLR 92.3076923076923% antisense-2
Lee translation initiation sites non-coding 
PhyloCSF score 12.1685 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LXN-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-LXN-1:7
5.0 lnc-LXN-1:7
5.1 lnc-SHOX2-9:5
5.2 lnc-LXN-1:7