Transcript: lnc-LYPD8-1:12

Basic information

LNCipedia transcript ID: lnc-LYPD8-1:12 
LNCipedia gene ID: lnc-LYPD8-1
Location (hg38): chr1:248718646-248722205
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1098 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000436484.1; XX-CR54.3-001; OTTHUMT00000171434.1; NONHSAT010821
Alternative gene names: ENSG00000232694.2; XX-CR54.3; OTTHUMG00000078489.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 40.8324 non-coding 
CPAT coding probability 1.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LYPD8-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OR14I1-1:1
4.0 lnc-OR14I1-1:1
4.1 lnc-OR14I1-1:1
5.0 lnc-OR14I1-1:1
5.1 lnc-LYPD8-1:5
5.2 lnc-LYPD8-1:12