Transcript: lnc-LYPLA1-1:3

Basic information

LNCipedia transcript ID: lnc-LYPLA1-1:3 
LNCipedia gene ID: lnc-LYPLA1-1
Ensembl Gene ID: ENSG00000260955
Ensembl Transcript ID: ENST00000565668
Location (hg38): chr8:54042989-54045629
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 440 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT126621; ENST00000565668.2
Alternative gene names: ENSG00000260955.2; RP11-30L15.6; AC100821.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.2682 non-coding 
CPAT coding probability 0.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LYPLA1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYPLA1-1:3
4.0 lnc-LYPLA1-1:3
4.1 lnc-LYPLA1-1:3
5.0 lnc-LYPLA1-1:3
5.1 lnc-IMPAD1-44:1
5.2 lnc-LYPLA1-1:3