Transcript: lnc-LYRM4-3:3

Basic information

LNCipedia transcript ID: lnc-LYRM4-3:3 
LNCipedia gene ID: lnc-LYRM4-3
Ensembl Gene ID: ENSG00000269985
Ensembl Transcript ID: ENST00000602674
Location (hg38): chr6:5451683-5458033
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1291 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT107518; ENST00000602674.1
Alternative gene names: ENSG00000269985.1; RP1-232P20.1; AL021328.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.4978 non-coding 
CPAT coding probability 5.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LYRM4-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYRM4-3:3
4.0 lnc-LYRM4-3:3
4.1 lnc-LYRM4-3:3
5.0 lnc-LYRM4-3:3
5.1 lnc-ECI2-101:5
5.2 lnc-LYRM4-3:3