Transcript: lnc-LYZL1-15:10

Basic information

LNCipedia transcript ID: lnc-LYZL1-15:10 
LNCipedia gene ID: lnc-LYZL1-15
Location (hg38): chr10:29409557-29420750
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000609413.1; ENST00000609413.5
Alternative gene names: ENSG00000224597.5; PTCHD3P1; ENSG00000224597.9; SVIL-AS1; ; RP11-534G20.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4438 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LYZL1-15:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYZL1-3:15
4.0 SVIL-AS1:19
4.1 SVIL-AS1:19
5.0 SVIL-AS1:19
5.1 lnc-NPY4R2-566:10
5.2 lnc-LYZL1-15:10