Transcript: lnc-LYZL1-15:22

Basic information

LNCipedia transcript ID: lnc-LYZL1-15:22 
LNCipedia gene ID: lnc-LYZL1-15
Location (hg38): chr10:29409572-29422372
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2025 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000427063.2; RP11-534G20.3-003; OTTHUMT00000047385.1; ENST00000427063.6
Alternative gene names: ENSG00000224597.3; RP11-534G20.3; OTTHUMG00000017881.1; ENSG00000224597.5; PTCHD3P1; ENSG00000224597.9; SVIL-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.2659 non-coding 
CPAT coding probability 47.74% coding 
Bazzini small ORFs 1 coding 
covF1Prop0.138888889
seqAAMDEDVLHPEEPHHRLLLRFTDDTFDPELAATIDNAGIT
orfFrame7.285540933

In stringent set: no

Locus conservation

Locus conservation?
lnc-LYZL1-15:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYZL1-3:6
4.0 SVIL-AS1:21
4.1 SVIL-AS1:21
5.0 SVIL-AS1:21
5.1 lnc-NPY4R2-566:22
5.2 lnc-LYZL1-15:22