Transcript: lnc-MAB21L2-1:1

Basic information

LNCipedia transcript ID: lnc-MAB21L2-1:1 
LNCipedia gene ID: lnc-MAB21L2-1
Ensembl Gene ID: ENSG00000249690
Ensembl Transcript ID: ENST00000507934
Location (hg38): chr4:150579089-150581545
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2209 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507934; ENST00000507934.1; RP11-1336O20.2-001; OTTHUMT00000364976.1; NONHSAT098732
Alternative gene names: ENSG00000249690; RP11-1336O20.2; ENSG00000249690.1; OTTHUMG00000161447.1; AC110813.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.6237 non-coding 
CPAT coding probability 39.14% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MAB21L2-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAB21L2-1:1
3.1 lnc-MAB21L2-1:1
4.0 lnc-MAB21L2-1:1
4.1 lnc-MAB21L2-1:1
5.0 lnc-MAB21L2-1:1
5.1 lnc-ARFIP1-27:1
5.2 lnc-MAB21L2-1:1