Transcript: lnc-MACC1-1:2

Basic information

LNCipedia transcript ID: lnc-MACC1-1:2 
LNCipedia gene ID: lnc-MACC1-1
Ensembl Gene ID: ENSG00000243004
Ensembl Transcript ID: ENST00000437191
Location (hg38): chr7:19931253-20140426
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 571 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000437191.1; AC005062.2-003; OTTHUMT00000326628.1; NONHSAT119400; ENST00000437191.5
Alternative gene names: ENSG00000243004.1; AC005062.2; OTTHUMG00000152535.1; ENSG00000243004.5; AC005062.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.9776 non-coding 
CPAT coding probability 1.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MACC1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MACC1-1:2
4.0 lnc-MACC1-1:2
4.1 lnc-MACC1-1:2
5.0 lnc-MACC1-1:2
5.1 lnc-SNX13-16:6
5.2 lnc-MACC1-1:2