Transcript: lnc-MADCAM1-5:1

Basic information

LNCipedia transcript ID: lnc-MADCAM1-5:1 
LNCipedia gene ID: lnc-MADCAM1-5
Ensembl Gene ID: ENSG00000267124
Ensembl Transcript ID: ENST00000591533
Location (hg38): chr19:305573-306467
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 542 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT060121; ENST00000591533.1
Alternative gene names: ENSG00000267124.2; CTD-3113P16.5; AC016588.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.1589 non-coding 
CPAT coding probability 4.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MADCAM1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MADCAM1-5:1
4.0 lnc-MADCAM1-5:1
4.1 lnc-MADCAM1-5:1
5.0 lnc-MADCAM1-5:1
5.1 lnc-RPL36-187:1
5.2 lnc-MADCAM1-5:1