Transcript: lnc-MAGEA10-1:2

Basic information

LNCipedia transcript ID: lnc-MAGEA10-1:2 
LNCipedia gene ID: lnc-MAGEA10-1
Ensembl Gene ID: ENSG00000266560
Ensembl Transcript ID: ENST00000509345
Location (hg38): chrX:152114994-152138521
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 871 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509345.2; RP11-1007I13.4-001; OTTHUMT00000445981.1; ENST00000509345.6
Alternative gene names: ENSG00000266560.1; RP11-1007I13.4; OTTHUMG00000179366.2; ENSG00000266560.5; AF274856.1; MAGEA10-MAGEA5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -73.5175 non-coding 
CPAT coding probability 88.53% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MAGEA10-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAGEA10-1:2
4.0 lnc-MAGEA10-1:2
4.1 lnc-MAGEA10-1:2
5.0 lnc-MAGEA10-1:2
5.1 lnc-CTAG1B-50:5
5.2 lnc-MAGEA10-1:2