Transcript: lnc-MAK16-2:1

Basic information

LNCipedia transcript ID: lnc-MAK16-2:1 
LNCipedia gene ID: lnc-MAK16-2
Ensembl Gene ID: ENSG00000254302
Ensembl Transcript ID: ENST00000518217
Location (hg38): chr8:34174886-34184895
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518217; ENST00000518217.1; RP11-431M3.1-001; OTTHUMT00000376638.1; NONHSAT125989; FPKM1_group_31169_transcript_1
Alternative gene names: ENSG00000254302; RP11-431M3.1; ENSG00000254302.1; OTTHUMG00000163985.1; AC087855.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.6152 non-coding 
CPAT coding probability 2.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAK16-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAK16-2:1
3.1 lnc-MAK16-2:1
4.0 lnc-MAK16-2:1
4.1 lnc-MAK16-2:1
5.0 lnc-MAK16-2:1
5.1 lnc-KCNU1-56:1
5.2 lnc-MAK16-2:1