Transcript: lnc-MAN2A1-9:1

Basic information

LNCipedia transcript ID: lnc-MAN2A1-9:1 
LNCipedia gene ID: lnc-MAN2A1-9
Ensembl Gene ID: ENSG00000251367
Ensembl Transcript ID: ENST00000509496
Location (hg38): chr5:109467353-109467952
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 600 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509496; ENST00000509496.1; RP11-231G15.2-001; OTTHUMT00000371722.1; NONHSAT103142
Alternative gene names: ENSG00000251367; RP11-231G15.2; ENSG00000251367.1; OTTHUMG00000163118.1; AC091917.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.6647 non-coding 
CPAT coding probability 4.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAN2A1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAN2A1-4:1
3.1 lnc-MAN2A1-4:1
4.0 lnc-MAN2A1-9:1
4.1 lnc-MAN2A1-9:1
5.0 lnc-MAN2A1-9:1
5.1 lnc-AP3S1-87:1
5.2 lnc-MAN2A1-9:1