Transcript: lnc-MANEA-3:7

Basic information

LNCipedia transcript ID: lnc-MANEA-3:7 
LNCipedia gene ID: lnc-MANEA-3
RefSeq ID: NR_015362
Location (hg38): chr6:93707083-93776481
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4798 bp
Exons: 10
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT114023; NR_015362; NR_015362.1
Alternative gene names: TSG1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.9281 non-coding 
CPAT coding probability 15.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MANEA-3:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MANEA-3:7
4.0 lnc-MANEA-3:7
4.1 lnc-MANEA-3:7
5.0 lnc-MANEA-3:7
5.1 lnc-PM20D2-37:4
5.2 lnc-MANEA-3:7